Thursday, April 16, 2015

Post Tech Spec Thoughts

The feedback we received after the tech spec was very useful: to either switch our chassis or our target location, and to simplify our system. Looking back on it, it seems like it should have been obvious that we should use an ocean organism to solve an ocean problem, but I think we were drowning in our many devices to the point where we forgot to even think of what our system would look like as we deployed it. Our E. coli wouldn’t have had a carbon source or even a native salt water survival system and wouldn’t have lasted very long in the sea. Right now, we have agreed to switch to a cyanobacterial chassis but are still deciding what strain to use- a common strain that floats, or a less-well-researched species that can adhere to plastics and other hydrophobic objects.

As for the device list, we are narrowing down our focus from four targets (PET, polyethylene, polystyrene, and phthalates) to just one, polystyrene. (We will add in others later if we have the time.) We’ll also have to remove my favorite part, the OmpW salt pump, as cyanobacteria naturally thrive in the salty ocean water. We are not sure now whether to even include a similar cell death mechanism, because how much damage could these cyanobacteria really do if they got loose?

The cell death question is now one of a large number of open questions on this project, and it’s kind of difficult to know how to proceed in answering them. I’m almost wishing for another Tech Spec—another chance to regroup, reassess, and move us forward in the best direction possible. This project is also making me realize just how challenging the different aspects of an open-ended project are: narrowing down research so the problem does not seem overwhelming, planning out a timeline for discussing certain aspects of the problem, and balancing higher-level thinking with detail specification. They are all super hard! Hopefully by the end of the semester I’ll have gotten at least a little better at these skills, even if we don’t have a design that would really work.


After reviewing our feedback and planning out a new direction of research, our group is going strong.  Go Team 99 Bottles!

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